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Tuesday, 02 December 2008 00:10

1. eMap

eMap is a Windows software package for simulations/calculations and 3D visualization in crystallography with the following features:

3D electron density/potential maps

  • calculations of 3D or 2D electron density or electrostatic potential maps;
  • visualization of calculated density maps in 3D;
  • rotation, zooming and panning in real-time;
  • perform a peak-search (atomic positions) within a calculated map with export in INS file format (can be read by any atomic structure visualizing software);
  • manipulations with reflections lists (expanding etc.) using built-in space group explorer which supports both space (530 settings for all 230 space groups) and plane groups (21 settings for 17 plane groups);

Diffraction patterns simulation

  • calculation of theoretical structure factors using scattering factors for X-ray or electrons with possibilities of editing the atom parameters, unit cell parameters and asymmetric unit;
  • simulate diffraction patterns (X-rays and kinematical electron);
  • simulate electron precession diffraction patterns in 2 modes - integrated and animated views;
  • display Kikuchi lines and HOLZ lines;

2. Multislice simulator

Multislice simulator is a plug-in for the eMap software package for multislice simulations of High Resolution Electron Microscope (HREM) images and dynamical electron diffraction patterns.

HREM simulation

  • calculations of projected potential, complex propagator, HREM images and dynamical electron diffraction patterns;
  • displaying CTF function with varying parameters;
  • list of microscopes with possibility of editing or/and adding new microscopes;
  • multislice FFT algorithm optimized for modern multicore CPUs with FFT area up to 4096x4096 pixels;
  • montage of HREM images with thickness/defocus dependence with zooming and scrolling possibilities;
  • simple images palette manipulation (brightness/contrast + color palettes);
  • efficient user interface allows single click for most operations.

HREM/ED simulations of nanoparticles

  • calculation of HREM images and dynamical electron diffraction patterns for huge super-cells (for example, proteins or nanoparticles);

3. Bloch wave simulator

Bloch wave simulator is a plug-in for the eMap software for calculations of dynamical electron diffraction point and CBED (disk) patterns.

CBED patterns

  • calculations of CBED patterns by Bloch waves method via matrix diagonalization (optimized for modern multicore CPUs);
  • visualization of calculated CBED patterns;
  • in-plane rotation and zooming in real-time;

Last Updated on Wednesday, 03 December 2008 21:55
 
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